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Diffstat (limited to 'README.md')
| -rw-r--r-- | README.md | 4 |
1 files changed, 3 insertions, 1 deletions
@@ -11,7 +11,6 @@ This script assumes the following: * All relevant input data is available either in either the `$HOME` directory or in a directory henceforth called `$BINDDIR`. Targets of any links in these directories should be accessible to the compute directories, as these will be mounted during relevant jobs. -* The output will be written to a results directory in `$BINDDIR`. * This script will be used with the SLURM queuing system on COSMA5 with the following options: `-p cosma5 -A durham -t 72:00:00`. If these options are not appropriate or if this script is to be run on other SLURM-run clusters one must set `$TOIL_SLURM_ARGS` prior to running. * `$CWL_SINGULARITY_CACHE` is set and the corresponding path contains (a link to) a singularity container `vlbi-cwl.sif`. @@ -33,6 +32,9 @@ Options can be the following: * `--scratch` is a path to local scratch storage where temporary data can be written to (optional). **`--scratch` must be local to the compute node. Nonlocal scratch storage will likely cause the pipeline to fail.** +* `--outdir` is a path relative to which intermediate files and final data products will be written. + Will be created if it does not exist. + If not specified, `$BINDDIR` will be used instead. * `<workflow name>` is the workflow file name without extension, e.g. `delay-calibration` or `concatenate-flag` for the VLBI pipeline or `HBA_calibrator` or `HBA_target` for LINC. ## Notes |