| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2025-07-09 | Add Makefile | Matthijs van der Wild | |
| Using the script is a bit simpler if it is added to a location in the user's PATH with execution permission set. The Makefile will, in addition, remove the file extension. After running make it is a simple matter of using `pilot` on the command line. | |||
| 2025-07-09 | bugfix: set $PROGRAM before use | Matthijs van der Wild | |
| 2025-07-08 | Document supported environment variables | Matthijs van der Wild | |
| Pilot recognises some environment variables and uses them if they are set. This adds some text to the readme so it is clear for the user. | |||
| 2025-07-08 | Expose the batching system | Matthijs van der Wild | |
| The queuing system was hard-coded to slurm. It may be, at times, convenient to be able to run workflows on the local node (or use a different queuing system altogether). The old behaviour is maintained by setting the batching system to slurm by default; the user can change the system by using --batch_system. | |||
| 2025-04-09 | use a single assignment of possibly pre-set APPTAINER variables | Matthijs van der Wild | |
| 2025-04-07 | append to container PATH through APPTAINERENV_PREPEND_PATH | Matthijs van der Wild | |
| Apptainer v1.3.6-1.el9 doesn't appear to allow resetting the container path using APPTAINERENV_PATH. Using this variable works in v1.3.4, but it isn't clear where this change was introduced. APPTAINERENV_PREPEND_PATH is a safe alternative. | |||
| 2025-04-07 | create vlbi-cwl_latest.sif symlink | Matthijs van der Wild | |
| In some versions of toil the `:latest` tag appears to be automatically appended. This is a workaround for these versions. | |||
| 2025-04-07 | place symlink in CWL_SINGULARITY_CACHE if it exists | Matthijs van der Wild | |
| 2025-04-01 | make symlinking the container idempotent | Matthijs van der Wild | |
| 2025-03-31 | place script directory at head of (PYTHON)PATH | Matthijs van der Wild | |
| 2025-03-31 | ensure that scratch storage directory exists | Matthijs van der Wild | |
| 2025-03-31 | ensure that $TMP_OUTDIR exists | Matthijs van der Wild | |
| 2025-03-31 | update usage information | Matthijs van der Wild | |
| 2024-11-14 | Correct syntax in variable setting | Matthijs van der Wild | |
| 2024-10-28 | Add missing closing parenthesis | Matthijs van der Wild | |
| 2024-10-28 | Add option to specify a separate output directory | Matthijs van der Wild | |
| 2024-10-28 | Fix Markdown issue | Matthijs van der Wild | |
| 2024-09-30 | Initialise repositories | Matthijs van der Wild | |
 |
index : lofar-pilot | |
| A small runner script for LOFAR pipelines. | Matthijs van der Wild |
| aboutsummaryrefslogtreecommitdiff |